Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0802319.7e.15b.25a.27a with 1 members (defective in cullin neddylation)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Glires / Rodentia / Hystricomorpha /

Bathyergidae

Completeness score: 0.50

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This HOG has 22 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0802319.7e.15b.25a	65	259	defective in cullin neddylation
2	HOG:E0802319.7e.15b.25a.27b.29a.24b	5	35	defective in cullin neddylation
3	HOG:E0802319.7e.14d	3	16	defective in cullin neddylation
4	HOG:E0802319.7e.15b.25b	2	193	defective in cullin neddylation
5	HOG:E0802319.7e.15b.25a.28b	2	5	defective in cullin neddylation
6	HOG:E0802319.7e.14d.22b.20b	2	2	defective in cullin neddylation
7	HOG:E0802319.7e.14b	2	204	defective in cullin neddylation
8	HOG:E0802319.4d.1b	2	8	defective in cullin neddylation
9	HOG:E0397866.1a	2	9	Defective in cullin neddylation protein
10	HOG:E0802319.7e.15b.25a.28a	1	9	defective in cullin neddylation
11	HOG:E0802319.7e.15b.25a.27b.29a.24a	1	2	defective in cullin neddylation
12	HOG:E0802319.7e.15b.25a.27b.29a	1	160	defective in cullin neddylation
13	HOG:E0802319.7e.15b.25a.27b	1	164	defective in cullin neddylation
14	HOG:E0802319.7e.15b	1	455	defective in cullin neddylation
15	HOG:E0802319.7e.14e	1	13	defective in cullin neddylation
16	HOG:E0802319.7e.14d.20b	1	1	defective in cullin neddylation
17	HOG:E0802319.7e.14d.20a	1	1	defective in cullin neddylation
18	HOG:E0802319.7e.13c	1	1	defective in cullin neddylation
19	HOG:E0802319.6i.10b.12a.18b	1	111	defective in cullin neddylation
20	HOG:E0802319.6d.8b.10d.16a.8b	1	1	defective in cullin neddylation
21	HOG:E0802319.4d	1	13	defective in cullin neddylation
22	HOG:E0802319.4b	1	4	defective in cullin neddylation

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